Мaster programs at FCSE 2018-2022 (3+1+1)

• Bioinformatics (3+1+1)
• Cloud computing (3+1+1)
• Cloud Computing (3+1+1) (in Macedonian)
• Computer Science (3+1+1)
• Ecoinformatics (3+1+1)
• Internet Technologies (3+1+1)
• IT Management (3 +1+1)
• Management in IT technologies (3+1+1) (in Macedonian)
• Security, cryptography and coding (3+1+1)
• Smart connected systems (3+1+1)
• Software Engineering (3+1+1)
• Statistics for data analysis (3+1+1)

Мaster programs at FCSE 2018-2022 (4+1)

• Bioinformatics (4+1)
• Cloud computing (4+1)
• Cloud Computing (4+1) (in Macedonian)
• Computer Science (4+1)
• Ecoinformatics (4+1)
• Education with ICT (4+1)
• Education with ICT (4+1) (in Macedonian)
• Intelligent systems (4+1)
• Internet Technologies (4+1)
• Management in IT technologies (4+1) (in Macedonian)
• Security, cryptography and coding (4 + 1)
• Smart connected systems (4 + 1)
• Software Engineering (4+1)
• Statistics for data analysis (4+1)

Master programs at FCSE 2013-2016 (4+1)

• Bioinformatics (4+1)
• Coding and Cryptography (4+1)
• Computer networks and e-technologies (4+1)
• Computer Sciences (4+1)
• Content-based Retrieval (4+1)
• Ecoinformatics TEMPUS (4+1) (in Macedonian)
• Intelligent Information Systems (4+1)
• Intelligent Systems Engineering (4+1)
• Software Engineering (4+1)
• Software Engineering TEMPUS (4+1)
• Statistics and Actuarial Mathematics (4+1) (in Macedonian)
• System on chip TEMPUS (4+1)

Master programs at FCSE since 2013-2016 (3+1+1)

• Bioinformatics (3+1+1)
• Coding and Cryptography (3+1+1)
• Computer networks and e-technologies (3+1+1)
• Computer Sciences (3+1+1)
• Content-based Retrieval (3+1+1)
• Ecoinformatics TEMPUS (3+1+1)
• Intelligent Information Systems (3+1+1)
• Intelligent Systems Engineering (3+1+1)
• Software Engineering (3+1+1)
• Software Engineering TEMPUS (3+1+1)
• Statistics and Actuarial Mathematics (3+1+1) (in Macedonian)
• System on chip TEMPUS (3+1+1)

• IT Management (4+1)